Population studies of Czech Sport Pony

Lubos Vostry, Hana Vostrá-Vydrová, Barbora Hofmanová, Zdenka Veselá

Abstract


Received: 2016-11-07 | Accepted: 2016-11-18 | Available online: 2017-12-31
http://dx.doi.org/10.15414/afz.2017.20.04.84-89

Population study of Czech Sport Pony breed was carried out based on pedigree information of animals registered in the Studbook. Pedigree records collected from the year 1972 to 2016 comprised information on 12548 animals used in the analyses. The pedigree depth of the analysed individuals was relatively low (3.7 generations). The mean value of inbreeding coefficient was 0.3 % (with maximum value 26 %). The proportion of non-inbreed animals was high (80 %). The average rate of inbreeding in the reference population was lower than 1 %, and the estimates of effective population sizes were relatively high (789). The presented paper is indicating that genetic diversity in the Czech Sport Pony breeds is still relatively high. However the available genetic variability in the Czech Sport Pony breed as an open population with continuous migration and gene flow was lower than was expected. Active management of the future rate of inbreeding is necessary for this breed.

Keywords: inbreeding, rate of inbreeding, effective populations, open population

References

ÁLVAREZ, I. et al. (2008) Relationship between genealogical and microsatellite information characterizing losses of genetic variability: Empirical evidence from the rare Xalda sheep breed. Livest. Sci., vol. 115, pp. 80–88. doi:http://dx.doi.org/10.1016/j.livsci.2007.06.009

BOICHARD, D. et al., (1997) The value of using probabilities of gene origin to measure genetic variability in a population. Genet. Sel. Evol., vol .29, pp. 5–23. doi:http://dx.doi.org/10.1051/gse:19970101

CABALLERO, A. (1994) Developments in the prediction of effictive population size. Heredity, vol. 73, pp. 657-679. doi:http://dx.doi.org/10.1038/hdy.1994.174

CABALLERO, A. and TORO, M. A. (2000) Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genet. Res. vol., 75, pp. 331–343.

CABALLERO, A. and TORO, M. A. (2002) Analysis of genetic diversity for the management of conserved subdivided populations. Conserv. Genet., vol. 3, pp. 289–299.

CERVANTES, I. et al. (2011) Estimation of effective population size from the rate of coancestry in pedigreed populations: Effective population size from rate of coancestry. J. Anim. Breed. Genet., vol. 128, pp. 56–63. doi:http://dx.doi.org/10.1111/j.1439-0388.2010.00881.x

CERVANTES, I. et al. (2008) Population history and genetic variability in the Spanish Arab Horse assessed via pedigree analysis. Livest. Sci., vol. 113. pp. 24–33. doi:http://dx.doi.org/10.1016/j.livsci.2007.02.011

CURIK, I. (2003) Inbreeding, Microsatellite Heterozygosity, and Morphological Traits in Lipizzan Horses. J. Hered., vol. 94, pp. 125–132. doi:http://dx.doi.org/10.1093/jhered/esg029

DRUML, T., BAUMUNG, R. and SÖLKNER J. ( 2009) Pedigree analysis in the Austrian Noriker draught horse: genetic diversity and the impact of breeding for coat colour on population structure. J. Anim. Breed. Genet. 126:348–356. doi:http://dx.doi.org/10.1111/j.1439-0388.2008.00790.x

FALCONER, D. S., and MACKAY, T. F. C. (2009) Introduction to quantitative genetics. 4. ed., Pearson, Prentice Hall, Harlow.

FERNANDEZ, J. et al. (2005) Efficiency of the Use of Pedigree and Molecular Marker Information in Conservation Programs. Genetics., vol. 170, pp.1313–1321. doi:http://dx.doi.org/10.1534/genetics.104.037325

GÓMEZ, M. D. et al.(2009) Assessment of inbreeding depression for body measurements in Spanish Purebred (Andalusian) horses. Livest. Sci., vol. 122, pp. 149–155. doi:http://dx.doi.org/10.1016/j.livsci.2008.08.007

GOYACHE, F. et al. (2003) Using pedigree information to monitor genetic variability of endangered populations: the Xalda sheep breed of Asturias as an example. J. Anim. Breed. Genet., vol. 120, pp. 95–105. doi:http://dx.doi.org/10.1046/j.1439-0388.2003.00378.x

GUTIÉRREZ, J. P. (2008) Individual increase in inbreeding allows estimating effective sizes from pedigrees. Genet. Sel. Evol., vol. 40, pp. 359–378. doi:http://dx.doi.org/10.1051/gse:2008008

JAMES, J. W. (1972) Computation of genetic contributions from pedigrees. Theor. Appl. Genet., vol. 42, pp. 272–273. doi:http://dx.doi.org/10.1007/BF00277555

KADLEČÍK, O., and KASARDA, R. (2014) Genetic diversity of Slovak Sport Pony based on genealogical information. In Book of abstracts of the 65th annual meeting of the European federation of animal science. Wageningen: Wageningen Academic Publishers, 2014, p. 378.

Lacy, R. C. (1989) Analysis of founder representation in pedigrees: Founder equivalents and founder genome equivalents. Zoo Biol.. vol. 8, pp. 111–123. doi:http://dx.doi.org/10.1002/zoo.1430080203

LACY, R. C. (1995) Clarification of genetic terms and their use in the management of captive populations. Zoo Biol., vol. 14, pp. 565–577. doi:http://dx.doi.org/10.1002/zoo.1430140609

LACY, R. C. and BALLOU J. D. (1998) Effectiveness of Selection in Reducing the Genetic Load in Populations of Peromyscus polionotus During Generations of Inbreeding. Evolution, vol. 52, pp. 900. doi:http://dx.doi.org/10.2307/2411285

MacCLUER, J.  et al. (1983) Inbreeding and Pedigree Structure in Standardbred horses. Heredity, vol. 74, pp. 394–399.

MAIGNEL, L., BOICHARD D. and VERRIER E. (1996) Genetic variability of French dairy breeds estimated from pedigree information. Interbull Bull., vol. 14, pp. 49–54.

PJONTEK, J. et al. (2012) Pedigree analysis in four Slovak endangered horse breeds. Czech J Anim Sci., vol. 57, pp. 54–64.

SIDERITS, M., BAUMUNG, R. and FUERST-WALTL, B. (2013) Pedigree analysis in the German Paint Horse: Genetic variability and the influence of pedigree quality. Livest. Sci. 151:152–157. doi:http://dx.doi.org/10.1016/j.livsci.2012.10.018

SØRENSEN, A. C., SØRENSEN, M. K. and BERG, P. (2005) Inbreeding in Danish dairy cattle breeds. J. Dairy Sci., vol. 88, pp.1865–1872.

Valera, M. et al. (2005) Pedigree analysis in the Andalusian horse: population structure, genetic variability and influence of the Carthusian strain. Livest. Prod. Sci., vol. 95, pp. 57–66. doi:http://dx.doi.org/10.1016/j.livprodsci.2004.12.004

VanRADEN, P. M. (1992) Accounting for Inbreeding and Crossbreeding in Genetic Evaluation of Large Populations. J. Dairy Sci., vol. 75, pp. 3136–3144. doi:http://dx.doi.org/10.3168/jds.S0022-0302(92)78077-1

VICENTE, A. A., CAROLINO, N.. and GAMA, L. T. (2012) Genetic diversity in the Lusitano horse breed assessed by pedigree analysis. Livest. Sci., vol. 148, pp. 16–25. doi:http://dx.doi.org/10.1016/j.livsci.2012.05.002

VOSTRÁ-VYDROVá, H. et al. (2016) Pedigree analysis of the endangered Old Kladruber horse population. Livest. Sci., vol. 185, pp. 17–23. doi:http://dx.doi.org/10.1016/j.livsci.2016.01.001

WOLC, A. and BALIŃSKA, K. (2010) Inbreeding effects on exterior traits in Polish konik horses. Arch Tierz., vol. 53, pp. 1–8.

ZECHNER, P. et al. (2002) Analysis of diversity and population structure in the Lipizzan horse breed based on pedigree information. Livest. Prod. Sci., vol. 77, pp.137–146. doi:http://dx.doi.org/10.1016/S0301-6226(02)00079-9


Full Text:

PDF

Refbacks

  • There are currently no refbacks.


Copyright (c) 2018 Acta Fytotechnica et Zootechnica

© Slovak University of Agriculture in Nitra, Faculty of Agrobiology and Food Resources